InterPro : IPR015946

Name  K homology domain-like, alpha/beta Short Name  KH_dom-like_a/b
Type  Domain Description  The K homology domain is a common RNA-binding motif present in one or multiple copies in both prokaryotic and eukaryotic regulatory proteins. The KH motifs may act cooperatively to bind RNA in the case of multiple motifs, or independently in the case of single KH motif proteins. Prokaryotic (pKH) and eukaryotic (eKH) KH domains share a KH-motif, but have different topologies. The pKH domain has been found in a number of proteins, including the N-terminal domain of the S3 ribosomal protein [], the C-terminal domain of Era GTPase []and the two C-terminal domains of the NusA transcription factor []. The structure of the pKH domain consists of a two-layer alpha/beta fold in the arrangement alpha/beta(2)/alpha/beta. This entry represents prokaryotic-type K homology domains, as well as related domains that share the same 2-layer alpha/beta structure.
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Sequence Features

GO Displayer

Proteins

InterPro protein domain ID --> Contigs

 

Other

2 Child Features

Id Name Short Name Type
IPR024633 DnaA N-terminal domain DnaA_N_dom Domain
IPR023799 Ribosome-binding factor A domain Ribosome-bd_facA_dom Domain

2 Contains

Id Name Short Name Type
IPR004044 K Homology domain, type 2 KH_dom_type_2 Domain
IPR004087 K Homology domain KH_dom Domain

3 Found In

Id Name Short Name Type
IPR003718 OsmC/Ohr family OsmC/Ohr_fam Family
IPR016484 GTP-binding protein EngA GTP-bd_EngA Family
IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes OsmC_like_firmicutes Family

0 Parent Features

3 Publications

First Author Title Year Journal Volume Pages
Wimberly BT Structure of the 30S ribosomal subunit. 2000 Nature 407 327-39
Chen X Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif. 1999 Proc Natl Acad Sci U S A 96 8396-401
Worbs M An extended RNA binding surface through arrayed S1 and KH domains in transcription factor NusA. 2001 Mol Cell 7 1177-89



To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)