InterPro : IPR013816

Name  ATP-grasp fold, subdomain 2 Short Name  ATP_grasp_subdomain_2
Type  Domain Description  The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry represents subdomain 2 found at the C-terminal end of the ATP-grasp domain (the N-terminal subdomain is represented by ().
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Sequence Features

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Proteins

InterPro protein domain ID --> Contigs

 

Other

1 Child Features

Id Name Short Name Type
IPR020898 Synapsin, ATP-binding domain Synapsin_ATP-bd_dom Domain

6 Contains

Id Name Short Name Type
IPR005482 Biotin carboxylase, C-terminal Biotin_COase_C Domain
IPR011054 Rudiment single hybrid motif Rudment_hybrid_motif Domain
IPR018236 SAICAR synthetase, conserved site SAICAR_synthetase_CS Conserved_site
IPR020559 Phosphoribosylglycinamide synthetase, conserved site PRibGlycinamide_synth_CS Conserved_site
IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site D-Ala_lig_Van_CS Conserved_site
IPR019735 Synapsin, conserved site Synapsin_CS Conserved_site

26 Found In

Id Name Short Name Type
IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type ATP-grasp_succ-CoA_synth-type Domain
IPR005809 Succinyl-CoA synthetase, beta subunit Succ_CoA_synthase_bsu Family
IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PRibGlycinamid_synth_ATP-grasp Domain
IPR001359 Synapsin Synapsin Family
IPR013651 ATP-grasp fold, RimK-type ATP-grasp_RimK-type Domain
IPR011764 Biotin carboxylation domain Biotin_carboxylation_dom Domain
IPR005930 Pyruvate carboxylase Pyruv_COase Family
IPR000115 Phosphoribosylglycinamide synthetase PRibGlycinamide_synth Family
IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CbamoylP_synth_lsu_CPSase_dom Domain
IPR006275 Carbamoyl-phosphate synthase, large subunit CarbamoylP_synth_lsu Family
IPR006284 Glutathione synthetase, prokaryotic Glut_synth_pro Family
IPR004218 Prokaryotic glutathione synthetase, ATP-binding GSHS_ATP-bd Domain
IPR003806 ATP-grasp fold, DUF201-type ATP-grasp_DUF201-type Domain
IPR010121 Pyruvate, phosphate dikinase Pyruvate_phosphate_dikinase Family
IPR011095 D-alanine--D-alanine ligase, C-terminal Dala_Dala_lig_C Domain
IPR014608 ATP-citrate synthase ATP-citrate_synthase Family
IPR016301 Phosphoribosylaminoimidazole carboxylase AIR_COase Family
IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type ATP-grasp_carboxylate-amine Domain
IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit AIR_COase_ATPase-su Domain
IPR011870 Lysine biosynthesis enzyme LysX LysX_arch Family
IPR004549 Acetyl-CoA carboxylase, biotin carboxylase Acetyl_CoA_COase_biotin_COase Family
IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type SAICAR_synthase_Vibrio-typ Family
IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase SAICAR_synth Family
IPR014084 Urea carboxylase Urea_COase Family
IPR005905 D-alanine--D-alanine ligase D_ala_D_ala Family
IPR005862 Phosphoribosylglycinamide formyltransferase 2 PurT Family

0 Parent Features

3 Publications

First Author Title Year Journal Volume Pages
Fan C A common fold for peptide synthetases cleaving ATP to ADP: glutathione synthetase and D-alanine:d-alanine ligase of Escherichia coli. 1995 Proc Natl Acad Sci U S A 92 1172-6
Galperin MY A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity. 1997 Protein Sci 6 2639-43
Eroglu B Mutational analysis of ATP-grasp residues in the two ATP sites of Saccharomyces cerevisiae carbamoyl phosphate synthetase. 2002 Arch Biochem Biophys 407 1-9



To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)