Transcript : dd_Smed_v6_38_0_2 S. mediterranea
Length  1634     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Lists
This Contig is in 2 lists:
All contigs for Schmidtea mediterranea (241406)
All contigs in dd_Smed (41745)

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 168-1487 1320 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 168-1484 1317 1
NP_989129.1 Xenopus tropicalis tubulin alpha 1a 0.0 168-1487 1320 1

34 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.1330.20 GENE3D IPR018316   1.4E-57 975-1313 339 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 591-608 18 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 324-380 57 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 741-800 60 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 4.32E-100 168-896 729 1
G3DSA:3.40.50.1440 GENE3D IPR003008   5.6E-132 168-968 801 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 450-482 33 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 489-560 72 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 1305-1388 84 1
PR01161 PRINTS IPR000217 Tubulin signature 8.4E-90 567-620 54 1
PTHR11588 PANTHER IPR000217 TUBULIN 0.0 168-1514 1347 1
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 3.7E-30 1317-1481 165 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 1.8E-60 909-1343 435 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 3.4E-51 954-1340 387 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 429-467 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1206-1244 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 219-263 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 609-644 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 648-680 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 987-1031 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 300-338 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1320-1367 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1245-1301 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1431-1478 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 525-548 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 1128-1190 63 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 9.6E-121 807-842 36 1
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 6.71E-87 903-1472 570 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 168-1514 1347 1
SM00864 SMART IPR003008 Tubulin/FtsZ family, GTPase domain 8.4E-83 312-902 591 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
168-1520 1353 1
190-441 252 1
385-588 204 -1
1363-1560 198 1
139-312 174 -1
1-162 162 1
883-1011 129 -1
460-573 114 1
2-109 108 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300477 1.2E-76 3 257.3 0.7955936 171-1470 1300 1
TF329833 6.4E-29 3 99.3 0.41738066 177-858 682 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)