Transcript : dd_Smed_v6_295_0_1 S. mediterranea

Length  673     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067212.1, clone HB.12.10g unknown mRNA sequence
AY967630.1, clone NBE.5.04H mRNA sequence

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001000.2 Homo sapiens ribosomal protein S5 7.0E-99 68-643 576 1
NP_033121.2 Mus musculus ribosomal protein S5 7.0E-99 68-643 576 1
NP_523382.1 Drosophila melanogaster Ribosomal protein S5a 7.0E-95 62-643 582 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.455.10 GENE3D IPR023798 Ribosomal Protein S7; 2.0E-80 83-640 558 1
PTHR11205 PANTHER IPR000235 RIBOSOMAL PROTEIN S7 5.4E-123 77-640 564 1
SSF47973 SSF IPR023798 Ribosomal protein S7 4.84E-62 80-640 561 1
TIGR01028 TIGRFAMs IPR005716 S7_S5_E_A: ribosomal protein S7 1.1E-80 80-640 561 1
PF00177 PFAM IPR023798 Ribosomal protein S7p/S5e 5.5E-38 179-640 462 1


Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
65-643 579 1
202-357 156 -1
3-134 132 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300872 4.4E-74 2 246.0 0.7459138 141-642 502 1
TF105978 3.6E-6 2 24.8 0.5408618 279-642 364 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer

To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)