Transcript : dd_Smed_v6_10947_0_2 S. mediterranea
Length  1522     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Lists
This Contig is in 2 lists:
All contigs for Schmidtea mediterranea (241406)
All contigs in dd_Smed (41745)

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_033472.1 Mus musculus tubulin, alpha 3A 0.0 79-1398 1320 1
NP_476772.1 Drosophila melanogaster alpha-Tubulin at 84B 0.0 79-1395 1317 1
NP_989129.1 Xenopus tropicalis tubulin alpha 1a 0.0 79-1398 1320 1

34 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.287.600 GENE3D IPR023123 Helix hairpin bin 2.3E-30 1228-1392 165 1
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 2.7E-60 820-1254 435 1
G3DSA:3.40.50.1440 GENE3D IPR003008   7.6E-134 79-879 801 1
G3DSA:3.30.1330.20 GENE3D IPR018316   2.4E-57 886-1224 339 1
PS00227 PROSITE IPR017975 Tubulin subunits alpha, beta, and gamma signature. 0.0 502-519 18 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 1.0E-69 85-750 666 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 235-291 57 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 478-531 54 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 106-165 60 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 535-597 63 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 400-471 72 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 1216-1299 84 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 361-393 33 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 610-648 39 1
PR01161 PRINTS IPR000217 Tubulin signature 3.58E-91 652-711 60 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 1.7E-101 79-807 729 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 436-459 24 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 130-174 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1156-1212 57 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1231-1278 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 559-591 33 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 718-753 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1342-1389 48 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1117-1155 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 520-555 36 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 898-942 45 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 211-249 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 340-378 39 1
PR01162 PRINTS IPR002452 Alpha-tubulin signature 6.85E-121 1039-1101 63 1
PTHR11588:SF65 PANTHER TUBULIN ALPHA-3C/D CHAIN 0.0 79-1425 1347 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
79-1431 1353 1
1145-1462 318 -1
34-261 228 -1
1004-1162 159 1
462-578 117 1
924-1028 105 -1
87-188 102 1
101-202 102 1
1373-1474 102 1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 7.6E-80 1 268.2 0.86202365 81-1392 1312 1
TF300477 2.1E-80 1 269.7 0.85413927 84-1383 1300 1
TF329833 1.0E-28 1 98.6 0.4461235 90-768 679 1
TF317794 0.0075 6 11.4 0.74244416 289-1420 1132 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)