InterPro : IPR011035

Name  Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain Short Name  Ribosomal_L25/Gln-tRNA_synth
Type  Domain Description  The bacterial ribosomal protein L25 is bound to 5S rRNA along with L5 and L18, forming a separate domain of the ribosome []. The solution structure of protein L25 uncomplexed with RNA shows two significantly disordered loops and a closed beta-barrel domain with a complex topology that has significant structural similarities to the N-terminal domain of the Thermus thermophilusribosomal protein TL5, to the general stress protein CTC, and to the C-terminal anticodon-binding domain of Escherichia coliglutaminyl-tRNA synthetase (GlnRS) [, ]. GlnRS contains a duplication consisting of two L25-like beta-barrels domains with the swapping of N-terminal strands.
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Sequence Features

GO Displayer

Proteins

InterPro protein domain ID --> Contigs

 

Other

1 Child Features

Id Name Short Name Type
IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain Glu/Gln-tRNA-synth_Ib_codon-bd Domain

2 Contains

Id Name Short Name Type
IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Rbsml_L25/Gln-tRNA_synth_b-brl Domain
IPR020057 Ribosomal protein L25, beta domain Ribosomal_L25_b-dom Domain

4 Found In

Id Name Short Name Type
IPR000924 Glutamyl/glutaminyl-tRNA synthetase Glu/Gln-tRNA-synth Family
IPR004514 Glutamine-tRNA synthetase Gln-tRNA-synth Family
IPR004526 Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic Glu-tRNA-synth_arc/euk Family
IPR001021 Ribosomal protein L25, long-form Ribosomal_L25_long Family

0 Parent Features

3 Publications

First Author Title Year Journal Volume Pages
Fedorov R Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins. 2001 Acta Crystallogr D Biol Crystallogr 57 968-76
Sherlin LD tRNA-dependent active site assembly in a class I aminoacyl-tRNA synthetase. 2003 Structure 11 591-603
Lu M Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution. 2000 Proc Natl Acad Sci U S A 97 2023-8



To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)