InterPro : IPR014284

Name  RNA polymerase sigma-70 like domain Short Name  RNA_pol_sigma-70_dom
Type  Domain Description  The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry is found in all varieties of the sigma-70 type sigma factors, including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family () are included within this entry.
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Sequence Features

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Proteins

InterPro protein domain ID --> Contigs

 

Other

1 Child Features

Id Name Short Name Type
IPR000943 RNA polymerase sigma-70 RNA_pol_sigma70 Domain

7 Contains

Id Name Short Name Type
IPR011991 Winged helix-turn-helix DNA-binding domain WHTH_DNA-bd_dom Domain
IPR013324 RNA polymerase sigma factor, region 3/4 RNA_pol_sigma_r3_r4 Domain
IPR013325 RNA polymerase sigma factor, region 2 RNA_pol_sigma_r2 Domain
IPR007627 RNA polymerase sigma-70 region 2 RNA_pol_sigma70_r2 Domain
IPR007630 RNA polymerase sigma-70 region 4 RNA_pol_sigma70_r4 Domain
IPR007624 RNA polymerase sigma-70 region 3 RNA_pol_sigma70_r3 Domain
IPR000838 RNA polymerase sigma factor 70, ECF, conserved site RNA_pol_sigma70_ECF_CS Conserved_site

18 Found In

Id Name Short Name Type
IPR014305 RNA polymerase sigma-G type, actinobacteria RNA_pol_sigma-G_actinobac Family
IPR014327 RNA polymerase sigma-70, Bacteroidetes type RNA_pol_sigma70_bacteroid Family
IPR014325 RNA polymerase sigma-E type, actinobacteria RNA_pol_sigma-E_actinobac Family
IPR014326 RNA polymerase sigma-70 factor, Planctomycetaceae RNA_pol_sigma-70_Plancto Family
IPR014331 RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica RNA_pol_sigma70_ECF_RHOBA Family
IPR014303 RNA polymerase sigma-70, ECF type RNA_pol_sigma-70_ECF Family
IPR014304 RNA polymerase sigma-Z type RNA_pol_sigma-Z Family
IPR014300 RNA polymerase sigma-V type RNA_pol_sigma-V Family
IPR014244 RNA polymerase sigma-I type RNA_pol_sigma-I Family
IPR014289 RNA polymerase sigma-24-related RNA_pol_sigma-24-rel Family
IPR014286 RNA polymerase sigma-70 RpoE type RNA_pol_sigma70_RpoE Family
IPR014296 RNA polymerase sigma-M, bacillaceae RNA_pol_sigma-M_bacilli Family
IPR014293 RNA polymerase sigma-70, actinobacteria RNA_pol_sigma70_actinobac Family
IPR014298 RNA polymerase sigma-X type RNA_pol_sigma-X Family
IPR014294 RNA polymerase sigma-W, bacillaceae RNA_pol_sigma-W_bacilli Family
IPR017622 Transcription regulator, P21/BotR , Clostridium toxin-associated Tscrpt_reg_p21/BotR Family
IPR011517 RNA polymerase sigma-70 ECF-like RNA_pol_sigma70_ECF-like Family
IPR011745 RNA polymerase sigma-70, Myxococcus xanthus RNA_pol_sigma70_MYXXA Family

0 Parent Features

3 Publications

First Author Title Year Journal Volume Pages
Helmann JD Structure and function of bacterial sigma factors. 1988 Annu Rev Biochem 57 839-72
Lonetto M The sigma 70 family: sequence conservation and evolutionary relationships. 1992 J Bacteriol 174 3843-9
Gribskov M Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins. 1986 Nucleic Acids Res 14 6745-63



To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)