InterPro : IPR004365

Name  OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Short Name  NA-bd_OB_tRNA
Type  Domain Description  The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See ). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule . This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.
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Sequence Features

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Proteins

InterPro protein domain ID --> Contigs

 

Other

0 Child Features

0 Contains

14 Found In

Id Name Short Name Type
IPR012340 Nucleic acid-binding, OB-fold NA-bd_OB-fold Domain
IPR004523 Aspartyl-tRNA synthetases Asp-tRNA_synthase Family
IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type Asp-tRNA-ligase_IIb_bac/mt Family
IPR002313 Lysine-tRNA ligase, class II Lys-tRNA-ligase_II Family
IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Asp/Asn-tRNA-synth_IIb Family
IPR004591 Replication factor A protein 1 Rfa1 Family
IPR014647 CST complex subunit Stn1 CST_STN1 Family
IPR020873 3'-5' exoribonuclease YhaM 3'-5'_exoribonuclease_YhaM Family
IPR020780 Aspartyl-tRNA synthetase, archaea Asp-tRNA-synth_arc Family
IPR011149 DNA polymerase II small subunit, archaeal Pol2_small_arc Family
IPR014646 Replication factor A protein 2 Rfa2/RPA32 Family
IPR016499 Nucleic acid binding protein, Rv2694c, predicted NucleicA-bd_Rv2694c_prd Family
IPR016798 Uncharacterised conserved protein UCP021980, OB-fold UCP021980_OB-fold Family
IPR006308 DNA polymerase III, alpha subunit, Gram-positive type PolC_gram_pos Family

1 Parent Features

Id Name Short Name Type
IPR012340 Nucleic acid-binding, OB-fold NA-bd_OB-fold Domain

3 Publications

First Author Title Year Journal Volume Pages
Koonin EV Protein fold recognition using sequence profiles and its application in structural genomics. 2000 Adv Protein Chem 54 245-75
Keshav KF Rpa4, a homolog of the 34-kilodalton subunit of the replication protein A complex. 1995 Mol Cell Biol 15 3119-28
Bochkarev A Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA. 1997 Nature 385 176-81



To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)