Transcript : SMEST044308006.1 S. mediterranea S2F2

Length  1184   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.01
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_081398.2 Mus musculus major facilitator superfamily domain containing 3 2.36E-16 99-950 852 1
XP_011415524.1 Crassostrea gigas major facilitator superfamily domain-containing protein 3-like 3.6E-37 33-947 915 1
XP_003228431.1 Anolis carolinensis major facilitator superfamily domain containing 3 1.26E-32 21-986 966 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12778:SF10 PANTHER   1.0E-70 6-1151 1146 1
SSF103473 SSF IPR020846 MFS general substrate transporter 2.88E-14 6-980 975 1
PTHR12778 PANTHER SOLUTE CARRIER FAMILY 33 (ACETYL-COA TRANSPORTER)- 1.0E-70 6-1151 1146 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
3-1049 1047 1
719-901 183 1
581-751 171 -1
422-538 117 -1
985-1089 105 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)