Transcript : SMEST032462006.1 S. mediterranea S2F2

Length  6659   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.01
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_015760844.1 Acropora digitifera cadherin-23-like 8.03E-172 87-6335 6249 1
XP_011431008.1 Crassostrea gigas protocadherin Fat 4-like 3.89E-171 924-6335 5412 1
XP_012556552.1 Hydra vulgaris protocadherin Fat 4-like 4.62E-147 243-6383 6141 1

24 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF49313 SSF IPR015919 Cadherin-like 2.14E-7 2325-2573 249 1
SSF49313 SSF IPR015919 Cadherin-like 2.09E-16 3588-3908 321 1
SSF49313 SSF IPR015919 Cadherin-like 2.71E-5 4851-5123 273 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 1.96E-6 1008-1148 141 1
PTHR24027 PANTHER FAMILY NOT NAMED 2.5E-68 2184-5381 3198 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 7.59E-5 669-818 150 1
SSF49313 SSF IPR015919 Cadherin-like 1.57E-8 6108-6341 234 1
SSF49313 SSF IPR015919 Cadherin-like 1.18E-11 4542-4820 279 1
PTHR24027 PANTHER FAMILY NOT NAMED 2.5E-68 6036-6314 279 1
PF00028 PFAM IPR002126 Cadherin domain 2.2E-12 3591-3836 246 1
PF00028 PFAM IPR002126 Cadherin domain 2.7E-10 4545-4814 270 1
PF00028 PFAM IPR002126 Cadherin domain 4.5E-7 2325-2567 243 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 5.75E-5 315-494 180 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 3.66E-9 501-647 147 1
PTHR24027:SF248 PANTHER SUBFAMILY NOT NAMED 2.5E-68 6036-6314 279 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 1.19E-7 831-980 150 1
PTHR24027:SF248 PANTHER SUBFAMILY NOT NAMED 2.5E-68 2184-5381 3198 1
SSF49313 SSF IPR015919 Cadherin-like 8.28E-10 3288-3551 264 1
SSF82895 SSF IPR000884 TSP-1 type 1 repeat 5.49E-7 1173-1313 141 1
SSF49313 SSF IPR015919 Cadherin-like 3.14E-5 2646-2912 267 1
PF00090 PFAM IPR000884 Thrombospondin type 1 domain 0.0026 1185-1319 135 1
PF00090 PFAM IPR000884 Thrombospondin type 1 domain 5.3E-6 855-977 123 1
PF00090 PFAM IPR000884 Thrombospondin type 1 domain 7.9E-6 519-650 132 1
PF00090 PFAM IPR000884 Thrombospondin type 1 domain 1.3E-8 1020-1151 132 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

18 ORFs

Contig Location Length Strand Sequence
54-6560 6507 1
512-763 252 -1
5378-5626 249 -1
528-770 243 -1
1930-2133 204 1
5876-6079 204 -1
2507-2659 153 -1
3413-3562 150 -1
6193-6330 138 1
6527-6658 132 -1
925-1056 132 -1
4118-4243 126 -1
4570-4692 123 1
3604-3723 120 1
769-885 117 1
2864-2977 114 -1
776-880 105 1
3173-3277 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)