Transcript : SMEST028859001.1 S. mediterranea S2F2

Length  3625   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.02
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003741023.1 Metaseiulus occidentalis agrin-like 4.46E-47 2546-3397 852 1
XP_015793858.1 Tetranychus urticae agrin-like 3.31E-46 2465-3439 975 1
XP_015919167.1 Parasteatoda tepidariorum agrin-like 4.81E-46 2546-3445 900 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10913 PANTHER FOLLISTATIN-RELATED 1.3E-33 2672-3427 756 1
PF00050 PFAM IPR002350 Kazal-type serine protease inhibitor domain 6.4E-7 3068-3208 141 1
SSF100895 SSF Kazal-type serine protease inhibitors 2.36E-11 3065-3211 147 1
PF07648 PFAM IPR002350 Kazal-type serine protease inhibitor domain 4.4E-4 2858-2980 123 1
PF07648 PFAM IPR002350 Kazal-type serine protease inhibitor domain 5.5E-9 3326-3436 111 1
PF07648 PFAM IPR002350 Kazal-type serine protease inhibitor domain 7.7E-6 2663-2770 108 1
SSF100895 SSF Kazal-type serine protease inhibitors 1.66E-10 2819-2980 162 1
SSF100895 SSF Kazal-type serine protease inhibitors 1.29E-9 3293-3436 144 1
SSF100895 SSF Kazal-type serine protease inhibitors 3.53E-6 2663-2773 111 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

12 ORFs

Contig Location Length Strand Sequence
2453-3454 1002 1
539-1030 492 -1
123-437 315 -1
2874-3068 195 -1
1682-1858 177 1
53-205 153 -1
1467-1598 132 -1
3316-3429 114 -1
3281-3388 108 -1
2820-2924 105 1
392-496 105 -1
22-123 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)