Transcript : SMEST028854007.1 S. mediterranea S2F2

Length  3029   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.01
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_598368.2 Homo sapiens protein O-fucosyltransferase 2 2.82E-76 182-1336 1155 1
NP_084538.2 Mus musculus protein O-fucosyltransferase 2 1.77E-75 182-1336 1155 1
XP_010599607.1 Loxodonta africana protein O-fucosyltransferase 2 6.87E-80 176-1336 1161 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR13398 PANTHER GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 3.8E-90 197-1441 1245 1
PF10250 PFAM IPR019378 GDP-fucose protein O-fucosyltransferase 8.8E-45 200-1228 1029 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
2-1387 1386 1
2495-2704 210 -1
600-800 201 1
2553-2753 201 1
114-272 159 1
1524-1679 156 1
1859-2008 150 1
849-986 138 1
2109-2237 129 -1
599-706 108 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)