Transcript : SMEST026652003.1 S. mediterranea S2F2

Length  3630   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.17
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

0 Blast Sequence Features

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12550 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 3.6E-23 70-390 321 1
PTHR12550 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 3.6E-23 2785-2820 36 1
PTHR12550:SF42 PANTHER   3.6E-23 70-390 321 1
PF00855 PFAM IPR000313 PWWP domain 2.2E-9 133-378 246 1
SSF63748 SSF Tudor/PWWP/MBT 1.26E-19 130-387 258 1
PTHR12550:SF42 PANTHER   3.6E-23 2785-2820 36 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

18 ORFs

Contig Location Length Strand Sequence
97-3465 3369 1
1369-1878 510 -1
560-895 336 1
283-603 321 -1
2165-2470 306 1
876-1178 303 -1
2609-2863 255 1
2755-2994 240 -1
2822-3046 225 -1
1629-1850 222 -1
299-499 201 1
1907-2062 156 1
3356-3508 153 1
1736-1882 147 1
143-265 123 1
2915-3016 102 1
3179-3280 102 -1
603-704 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)