Transcript : SMEST022998001.1 S. mediterranea S2F2

Length  1418   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.18
Published Transcripts 
mRNA: KT163558.1, slc16a-13 (slc16a-13) mRNA - complete cds
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Organism Field Displayer

Association Displayer

Genomics

GO Displayer

Homologue Displayer

Genes

Predicted Gene Displayer

J Browse Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_014299266.1 Microplitis demolitor monocarboxylate transporter 12 6.49E-30 104-814 711 1
XP_014362186.1 Papilio machaon monocarboxylate transporter 12 1.94E-27 104-772 669 1
XP_013168408.1 Papilio xuthus monocarboxylate transporter 12 2.5E-27 104-772 669 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF07690 PFAM IPR011701 Major Facilitator Superfamily 2.3E-16 170-841 672 1
SSF103473 SSF IPR020846 MFS general substrate transporter 1.57E-31 35-871 837 1
PTHR11360:SF128 PANTHER   1.6E-49 104-877 774 1
PTHR11360 PANTHER MONOCARBOXYLATE TRANSPORTER 1.6E-49 104-877 774 1

6 ORFs

Contig Location Length Strand Sequence
2-1066 1065 1
319-552 234 1
1257-1400 144 1
816-956 141 1
16-156 141 -1
1303-1416 114 1

0 Treefam SequenceFeatures

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)