Transcript : SMEST021850002.1 S. mediterranea S2F2

Length  794   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.04
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_650780.1 Drosophila melanogaster mitochondrial ribosomal protein L55 3.78E-13 272-538 267 1
XP_006813418.1 Saccoglossus kowalevskii 39S ribosomal protein L55, mitochondrial-like 1.26E-17 311-565 255 1
XP_012795117.1 Schistosoma haematobium 39S ribosomal protein L55, mitochondrial 1.29E-17 290-565 276 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR34095:SF1 PANTHER   7.4E-31 191-571 381 1
PF09776 PFAM IPR018615 Mitochondrial ribosomal protein L55 4.2E-24 272-562 291 1
PTHR34095 PANTHER   7.4E-31 191-571 381 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
347-568 222 1
2-115 114 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)