Transcript : SMEST021791001.1 S. mediterranea S2F2

Length  798   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.13
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_015754742.1 Acropora digitifera ETS-related transcription factor Elf-2-like 4.84E-5 393-689 297 1
NP_504949.1 Caenorhabditis elegans hypothetical protein 4.88E-6 408-692 285 1
XP_002115471.1 Trichoplax adhaerens hypothetical protein 1.83E-5 456-692 237 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11849:SF190 PANTHER   3.2E-14 345-683 339 1
SSF46785 SSF IPR011991 Winged helixDNA-binding domain 8.5E-25 384-698 315 1
PTHR11849 PANTHER ETS 3.2E-14 345-683 339 1
PF00178 PFAM IPR000418 Ets-domain 1.9E-21 456-683 228 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
90-713 624 1
494-652 159 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)