Transcript : SMEST021391002.1 S. mediterranea S2F2

Length  3679   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.39
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_004425.2 Homo sapiens echinoderm microtubule associated protein like 1 0.0 142-2334 2193 1
NP_001020912.1 Rattus norvegicus echinoderm microtubule associated protein like 1 0.0 112-2334 2223 1
XP_001367643.1 Monodelphis domestica echinoderm microtubule associated protein like 1 0.0 142-2334 2193 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF12894 PFAM IPR024977 Anaphase-promoting complex subunit 4 WD40 domain 3.0E-6 1672-1941 270 1
PF03451 PFAM IPR005108 HELP motif 2.0E-27 460-672 213 1
PTHR13720:SF29 PANTHER   1.6E-270 421-3606 3186 1
PTHR13720:SF29 PANTHER   1.6E-270 34-48 15 1
PTHR13720 PANTHER WD-40 REPEAT PROTEIN 1.6E-270 421-3606 3186 1
PTHR13720 PANTHER WD-40 REPEAT PROTEIN 1.6E-270 34-48 15 1
SSF50998 SSF IPR011047 Quinoprotein alcohol dehydrogenase-like 3.65E-50 556-1629 1074 1
SSF50998 SSF IPR011047 Quinoprotein alcohol dehydrogenase-like 3.65E-50 1714-2019 306 1
SSF50960 SSF TolB, C-terminal domain 6.15E-10 1903-2337 435 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 0.0049 685-819 135 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 6.9E-4 1513-1608 96 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 0.17 2233-2331 99 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
112-2343 2232 1
616-783 168 -1
1139-1294 156 1
1922-2071 150 -1
2155-2289 135 -1
2928-3047 120 1
1942-2055 114 -1
1340-1447 108 1
3209-3310 102 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)