Transcript : SMEST021389002.1 S. mediterranea S2F2

Length  1885   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.04
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611079.2 Drosophila melanogaster CG8399 gene product from transcript CG8399-RB 1.6E-33 387-1592 1206 1
XP_012794437.1 Schistosoma haematobium Ferric-chelate reductase 1 1.76E-120 330-1667 1338 1
XP_013403335.1 Lingula anatina putative ferric-chelate reductase 1 1.56E-75 372-1667 1296 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23130:SF63 PANTHER SUBFAMILY NOT NAMED 7.5E-90 381-1730 1350 1
PTHR23130 PANTHER FAMILY NOT NAMED 7.5E-90 57-86 30 1
PTHR23130:SF63 PANTHER SUBFAMILY NOT NAMED 7.5E-90 57-86 30 1
PF03188 PFAM IPR006593 Eukaryotic cytochrome b561 5.9E-10 999-1394 396 1
PF03351 PFAM IPR005018 DOMON domain 5.1E-9 447-854 408 1
PTHR23130 PANTHER FAMILY NOT NAMED 7.5E-90 381-1730 1350 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
321-1721 1401 1
1595-1795 201 -1
945-1124 180 -1
1322-1483 162 1
430-576 147 -1
793-903 111 1
1783-1884 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)