Transcript : SMEST019747001.1 S. mediterranea S2F2

Length  2214   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.05
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_731354.1 Drosophila melanogaster pasilla 1.65E-66 177-1145 969 1
XP_011413910.1 Crassostrea gigas RNA-binding protein Nova-1-like 2.62E-78 69-1139 1071 1
XP_013069801.1 Biomphalaria glabrata RNA-binding protein Nova-1-like 2.44E-73 108-1145 1038 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1.1E-94 2136-2168 33 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 1.9E-16 171-389 219 1
PTHR10288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1.1E-94 117-761 645 1
PF00013 PFAM IPR004088 KH domain 1.7E-13 456-647 192 1
PF00013 PFAM IPR004088 KH domain 2.2E-9 183-365 183 1
PTHR10288:SF142 PANTHER NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1 1.1E-94 117-761 645 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 3.36E-17 447-668 222 1
PTHR10288:SF142 PANTHER NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1 1.1E-94 2136-2168 33 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
60-2012 1953 1
1060-1284 225 1
1210-1404 195 -1
1297-1467 171 1
166-327 162 1
2069-2212 144 1
1683-1826 144 -1
700-819 120 1
1579-1683 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)