Transcript : SMEST019093004.1 S. mediterranea S2F2

Length  1843   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.01
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001014524.1 Drosophila melanogaster Vesicular monoamine transporter 5.75E-42 287-1291 1005 1
XP_313775.4 Anopheles gambiae str. PEST AGAP004476-PA 3.63E-48 266-1354 1089 1
XP_008182169.1 Acyrthosiphon pisum synaptic vesicular amine transporter 3.9E-48 260-1354 1095 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23506 PANTHER   3.1E-53 266-1288 1023 1
PF07690 PFAM IPR011701 Major Facilitator Superfamily 1.2E-26 287-1282 996 1
SSF103473 SSF IPR020846 MFS general substrate transporter 1.44E-31 275-379 105 1
SSF103473 SSF IPR020846 MFS general substrate transporter 1.44E-31 530-1288 759 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
251-1291 1041 1
853-1182 330 -1
1597-1842 246 -1
1544-1768 225 1
1147-1347 201 1
1648-1827 180 1
1671-1841 171 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)