Transcript : SMEST018816001.1 S. mediterranea S2F2

Length  1215   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.28
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_012232385.1 Linepithema humile cytochrome P450 6k1-like 9.09E-36 441-1106 666 1
XP_013190589.1 Amyelois transitella uncharacterized LOC106134947 1.5E-30 453-1106 654 1
XP_012561555.1 Hydra vulgaris uncharacterized LOC100197942 8.13E-26 435-1106 672 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53098 SSF IPR012337 Ribonuclease H-like 5.01E-9 435-797 363 1
SSF53098 SSF IPR012337 Ribonuclease H-like 5.01E-9 924-1187 264 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
483-1049 567 1
56-259 204 1
1019-1213 195 -1
389-577 189 -1
535-696 162 1
237-389 153 -1
3-137 135 1
1071-1178 108 1
755-859 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)