Transcript : SMEST018813001.1 S. mediterranea S2F2

Length  800   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.27
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_011618617.1 Takifugu rubripes piggyBac transposable element-derived protein 4-like 1.65E-16 329-790 462 1
XP_008304982.1 Stegastes partitus piggyBac transposable element-derived protein 4-like 3.46E-14 317-790 474 1
XP_014194323.1 Haplochromis burtoni piggyBac transposable element-derived protein 4-like 2.33E-12 317-790 474 1

1 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13843 PFAM IPR029526 Transposase IS4 1.2E-15 338-787 450 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
215-619 405 1
214-408 195 -1
75-239 165 -1
3-104 102 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)