Transcript : SMEST018611015.1 S. mediterranea S2F2

Length  6574   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.01
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_651941.2 Drosophila melanogaster CG11155 gene product from transcript CG11155-RD 4.59E-31 3193-4320 1128 1
XP_002732006.1 Saccoglossus kowalevskii glutamate receptor ionotropic, delta-1-like 4.38E-35 3034-4317 1284 1
XP_011455697.1 Crassostrea gigas glutamate receptor ionotropic, kainate 1-like 5.99E-34 2974-4323 1350 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53850 SSF Periplasmic binding protein-like II 1.74E-24 1573-1767 195 1
SSF53850 SSF Periplasmic binding protein-like II 1.74E-24 2125-2517 393 1
SSF53850 SSF Periplasmic binding protein-like II 5.32E-32 3793-4194 402 1
SSF53850 SSF Periplasmic binding protein-like II 5.32E-32 3100-3444 345 1
PF10613 PFAM IPR019594 Ligated ion channel L-glutamate- and glycine-binding site 7.0E-16 3181-3441 261 1
PF10613 PFAM IPR019594 Ligated ion channel L-glutamate- and glycine-binding site 1.3E-9 1573-1767 195 1
PTHR18966 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1.0E-80 3067-4356 1290 1
PF00060 PFAM IPR001320 Ligand-gated ion channel 5.0E-26 3490-4293 804 1
PF00060 PFAM IPR001320 Ligand-gated ion channel 8.5E-25 1813-2604 792 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

15 ORFs

Contig Location Length Strand Sequence
1408-6468 5061 1
1734-1925 192 -1
2436-2609 174 -1
3608-3760 153 1
1724-1873 150 -1
1279-1425 147 -1
1788-1931 144 1
6272-6403 132 1
5017-5142 126 -1
5280-5399 120 -1
2229-2336 108 -1
2624-2728 105 1
3425-3526 102 1
4583-4684 102 -1
4515-4616 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)