Transcript : SMEST018611014.1 S. mediterranea S2F2

Length  2500   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.01
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001036250.1 Drosophila melanogaster Eye-enriched kainate receptor 8.1E-31 507-1604 1098 1
XP_002431269.1 Pediculus humanus corporis glutamate receptor, ionotropic kainate 2 precursor, putative 1.31E-34 447-1604 1158 1
XP_012147937.1 Megachile rotundata glutamate receptor ionotropic, kainate 2-like 5.4E-33 456-1604 1149 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF10613 PFAM IPR019594 Ligated ion channel L-glutamate- and glycine-binding site 1.5E-12 495-758 264 1
PTHR18966 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2.7E-60 465-1589 1125 1
PF00060 PFAM IPR001320 Ligand-gated ion channel 1.7E-25 804-1595 792 1
SSF53850 SSF Periplasmic binding protein-like II 2.17E-27 1116-1508 393 1
SSF53850 SSF Periplasmic binding protein-like II 2.17E-27 498-758 261 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
153-1913 1761 1
1927-2163 237 1
1914-2129 216 -1
1-201 201 1
725-916 192 -1
1427-1600 174 -1
715-864 150 -1
779-922 144 1
1220-1327 108 -1
1615-1719 105 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)