Transcript : SMEST018172002.1 S. mediterranea S2F2

Length  5314   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.15
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_016324246.1 Sinocyclocheilus anshuiensis lethal(2) giant larvae protein homolog 1-like 2.91E-26 2229-3815 1587 1
XP_016137390.1 Sinocyclocheilus grahami lethal(2) giant larvae protein homolog 1-like 1.11E-25 2229-3815 1587 1
XP_016383120.1 Sinocyclocheilus rhinocerous lethal(2) giant larvae protein homolog 1-like 1.99E-24 2460-3815 1356 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10241 PANTHER LETHAL(2) GIANT LARVAE PROTEIN 1.1E-74 1077-1277 201 1
PTHR10241 PANTHER LETHAL(2) GIANT LARVAE PROTEIN 1.1E-74 4098-4235 138 1
PTHR10241 PANTHER LETHAL(2) GIANT LARVAE PROTEIN 1.1E-74 3543-3863 321 1
PTHR10241:SF29 PANTHER   1.1E-74 1077-1277 201 1
PTHR10241:SF29 PANTHER   1.1E-74 1332-1658 327 1
PTHR10241:SF29 PANTHER   1.1E-74 3543-3863 321 1
PTHR10241 PANTHER LETHAL(2) GIANT LARVAE PROTEIN 1.1E-74 1332-1658 327 1
PTHR10241 PANTHER LETHAL(2) GIANT LARVAE PROTEIN 1.1E-74 1995-3398 1404 1
PF08366 PFAM IPR013577 LLGL2 3.6E-5 2247-2435 189 1
SSF50978 SSF IPR017986 WD40 repeat-like 4.4E-14 2034-2123 90 1
SSF50978 SSF IPR017986 WD40 repeat-like 4.4E-14 2640-2744 105 1
SSF50978 SSF IPR017986 WD40 repeat-like 4.4E-14 975-1634 660 1
PTHR10241:SF29 PANTHER   1.1E-74 1995-3398 1404 1
PTHR10241:SF29 PANTHER   1.1E-74 4098-4235 138 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
933-5099 4167 1
4746-5006 261 -1
2489-2632 144 -1
4346-4486 141 -1
2347-2472 126 -1
3895-4017 123 1
3780-3902 123 -1
1060-1176 117 1
3511-3627 117 -1
1887-2003 117 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)