Transcript : SMEST009917002.1 S. mediterranea S2F2

Length  1853   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.03
Published Transcripts 
mRNA: KX018850.1, GCR032 (gcr032) mRNA - complete cds
KX018850.1, GCR032 (gcr032) mRNA - complete cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524700.1 Drosophila melanogaster Allatostatin A receptor 1 7.73E-34 914-1255 342 1
XP_014256249.1 Cimex lectularius allatostatin-A receptor-like 3.61E-46 914-1309 396 1
XP_002414997.1 Ixodes scapularis allatostatin receptor, putative 3.45E-44 914-1327 414 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR24230 PANTHER G-PROTEIN COUPLED RECEPTOR 5.2E-30 1372-1776 405 1
PF00001 PFAM IPR000276 7 transmembrane receptor (rhodopsin family) 1.4E-13 1366-1641 276 1
SSF81321 SSF Family A G protein-coupled receptor-like 1.65E-25 1354-1716 363 1
PF00001 PFAM IPR000276 7 transmembrane receptor (rhodopsin family) 2.6E-30 881-1267 387 1
SSF81321 SSF Family A G protein-coupled receptor-like 4.85E-39 797-1327 531 1
PTHR24230 PANTHER G-PROTEIN COUPLED RECEPTOR 1.3E-47 833-1252 420 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
797-1393 597 1
1477-1851 375 1
1278-1541 264 -1
769-1017 249 -1
1099-1275 177 -1
1698-1853 156 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)