Author :

Name  Yokoyama S

63 Publications

First Author Title Year Journal Volume Pages
Sugiura I The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules. 2000 Structure 8 197-208
Perederina A Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription. 2004 Cell 118 297-309
Hanawa-Suetsugu K Crystal structure of elongation factor P from Thermus thermophilus HB8. 2004 Proc Natl Acad Sci U S A 101 9595-600
Hikida Y Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase. 2010 Acta Crystallogr D Biol Crystallogr 66 1301-7
Kurimoto K Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase. 2001 Structure 9 1253-63
Nureki O Enzyme structure with two catalytic sites for double-sieve selection of substrate. 1998 Science 280 578-82
Kawaguchi S The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus. 2001 EMBO J 20 562-9
Kuratani M Crystal structure and mutational study of a unique SpoU family archaeal methylase that forms 2'-O-methylcytidine at position 56 of tRNA. 2008 J Mol Biol 375 1064-75
Kishida H Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. 2003 Acta Crystallogr D Biol Crystallogr 59 23-31
Yamasaki K Solution structure of an Arabidopsis WRKY DNA binding domain. 2005 Plant Cell 17 944-56
Arai R Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8. 2009 J Struct Biol 168 575-81
Kato M Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. 2003 J Mol Biol 329 903-11
Kanai A Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus. 2009 RNA 15 420-31
Sakai H Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8. 2003 J Mol Biol 332 729-40
Iwahara J A helix-turn-helix structure unit in human centromere protein B (CENP-B). 1998 EMBO J 17 827-37
Agari Y X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7. 2008 Proteins 70 1108-11
Kishishita S Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8. 2004 Proteins 57 883-7
Hoseki J Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8. 2003 J Mol Biol 333 515-26
Wada T Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. 2003 J Biol Chem 278 30022-7
Tanaka Y Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA. 2001 EMBO J 20 6612-8
Tanaka Y Human centromere protein B induces translational positioning of nucleosomes on alpha-satellite sequences. 2005 J Biol Chem 280 41609-18
Handa N Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8. 2005 Protein Sci 14 1004-10
Seto A Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution. 2003 Proteins 53 768-71
Handa N The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain. 2006 J Mol Biol 363 114-24
Fukunaga R Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase. 2006 J Mol Biol 359 901-12
Vassylyev DG Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution. 2002 Nature 417 712-9
Ebihara A Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. 2006 Protein Sci 15 1494-9
Yoshimasu M An NMR study on the interaction of Escherichia coli DinI with RecA-ssDNA complexes. 2003 Nucleic Acids Res 31 1735-43
Goroncy AK Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein. 2010 Proteins 78 2176-80
Kaminishi T Crystallization and preliminary X-ray diffraction analysis of ribosomal protein L11 methyltransferase from Thermus thermophilus HB8. 2003 Acta Crystallogr D Biol Crystallogr 59 930-2

To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)