Author :

Name  Aravind L

127 Publications

First Author Title Year Journal Volume Pages
Aravind L THUMP--a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases. 2001 Trends Biochem Sci 26 215-7
Aravind L Conserved domains in DNA repair proteins and evolution of repair systems. 1999 Nucleic Acids Res 27 1223-42
Ponting CP Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. 1999 J Mol Biol 289 729-45
Iyer LM The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains. 2006 Genome Biol 7 R60
Verma R Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. 2002 Science 298 611-5
Iyer LM Evolutionary history and higher order classification of AAA+ ATPases. 2004 J Struct Biol 146 11-31
Iyer LM Common origin of four diverse families of large eukaryotic DNA viruses. 2001 J Virol 75 11720-34
Anantharaman V Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability. 2004 BMC Genomics 5 45
Ponting CP PAS: a multifunctional domain family comes to light. 1997 Curr Biol 7 R674-7
Mans BJ Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex. 2004 Cell Cycle 3 1612-37
Aravind L A novel family of predicted phosphoesterases includes Drosophila prune protein and bacterial RecJ exonuclease. 1998 Trends Biochem Sci 23 17-9
Aravind L Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. 1999 J Mol Biol 287 1023-40
Aravind L The STAS domain - a link between anion transporters and antisigma-factor antagonists. 2000 Curr Biol 10 R53-5
Aravind L Novel predicted RNA-binding domains associated with the translation machinery. 1999 J Mol Evol 48 291-302
Aravind L The WWE domain: a common interaction module in protein ubiquitination and ADP ribosylation. 2001 Trends Biochem Sci 26 273-5
Anantharaman V Comparative genomics and evolution of proteins involved in RNA metabolism. 2002 Nucleic Acids Res 30 1427-64
Anantharaman V TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes. 2001 FEMS Microbiol Lett 197 215-21
Ponting CP START: a lipid-binding domain in StAR, HD-ZIP and signalling proteins. 1999 Trends Biochem Sci 24 130-2
Iyer LM Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily. 2001 Proteins 43 134-44
Makarova KS A superfamily of archaeal, bacterial, and eukaryotic proteins homologous to animal transglutaminases. 1999 Protein Sci 8 1714-9
Aravind L The GAF domain: an evolutionary link between diverse phototransducing proteins. 1997 Trends Biochem Sci 22 458-9
Aravind L SAP - a putative DNA-binding motif involved in chromosomal organization. 2000 Trends Biochem Sci 25 112-4
Anantharaman V Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. 2001 J Mol Biol 307 1271-92
Aravind L Eukaryote-specific domains in translation initiation factors: implications for translation regulation and evolution of the translation system. 2000 Genome Res 10 1172-84
Makarova KS A novel superfamily of predicted cysteine proteases from eukaryotes, viruses and Chlamydia pneumoniae. 2000 Trends Biochem Sci 25 50-2
Anantharaman V Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing. 2012 Mol Biosyst 8 3142-65
Anantharaman V The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies. 2004 Proteins 56 795-807
Aravind L The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair. 1998 Trends Biochem Sci 23 284-6
Neuwald AF AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. 1999 Genome Res 9 27-43
Aravind L Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. 1998 Nucleic Acids Res 26 4205-13

To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)