Author :

Name  Koonin EV

114 Publications

First Author Title Year Journal Volume Pages
Koonin EV Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search. 1994 J Mol Biol 244 125-32
Koonin EV A conserved domain in putative bacterial and bacteriophage transglycosylases. 1994 Trends Biochem Sci 19 106-7
Koonin EV Tentative identification of RNA-dependent RNA polymerases of dsRNA viruses and their relationship to positive strand RNA viral polymerases. 1989 FEBS Lett 252 42-6
Aravind L THUMP--a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases. 2001 Trends Biochem Sci 26 215-7
Gorbalenya AE N-terminal domains of putative helicases of flavi- and pestiviruses may be serine proteases. 1989 Nucleic Acids Res 17 3889-97
Aravind L Conserved domains in DNA repair proteins and evolution of repair systems. 1999 Nucleic Acids Res 27 1223-42
Ponting CP Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. 1999 J Mol Biol 289 729-45
Verma R Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. 2002 Science 298 611-5
Iyer LM Evolutionary history and higher order classification of AAA+ ATPases. 2004 J Struct Biol 146 11-31
Iyer LM Common origin of four diverse families of large eukaryotic DNA viruses. 2001 J Virol 75 11720-34
Gorbalenya AE A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. 1990 FEBS Lett 262 145-8
Srinivasan M The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A. 2011 EMBO J 30 873-81
Dolja VV Phylogeny of capsid proteins of small icosahedral RNA plant viruses. 1991 J Gen Virol 72 ( Pt 7) 1481-6
Koonin EV The chromo superfamily: new members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin. 1995 Nucleic Acids Res 23 4229-33
Bork P A new family of carbon-nitrogen hydrolases. 1994 Protein Sci 3 1344-6
Koonin EV A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. 1993 Nucleic Acids Res 21 2541-7
Mans BJ Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex. 2004 Cell Cycle 3 1612-37
Bork P A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins. 1997 FASEB J 11 68-76
Koonin EV SpoU protein of Escherichia coli belongs to a new family of putative rRNA methylases. 1993 Nucleic Acids Res 21 5519
Galperin MY Novel domains of the prokaryotic two-component signal transduction systems. 2001 FEMS Microbiol Lett 203 11-21
Gorbalenya AE Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. 1989 Nucleic Acids Res 17 4713-30
Aravind L A novel family of predicted phosphoesterases includes Drosophila prune protein and bacterial RecJ exonuclease. 1998 Trends Biochem Sci 23 17-9
Aravind L Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. 1999 J Mol Biol 287 1023-40
Koonin EV A duplicated catalytic motif in a new superfamily of phosphohydrolases and phospholipid synthases that includes poxvirus envelope proteins. 1996 Trends Biochem Sci 21 242-3
Koonin EV Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. 1993 Crit Rev Biochem Mol Biol 28 375-430
Aravind L The STAS domain - a link between anion transporters and antisigma-factor antagonists. 2000 Curr Biol 10 R53-5
Morozov V A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases. 1997 Trends Biochem Sci 22 417-8
Koonin EV Vaccinia virus encodes four putative DNA and/or RNA helicases distantly related to each other. 1992 J Gen Virol 73 ( Pt 4) 989-93
Aravind L Novel predicted RNA-binding domains associated with the translation machinery. 1999 J Mol Evol 48 291-302
Koonin EV Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics. 1996 Curr Opin Genet Dev 6 757-62

To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)