InterPro : IPR004358

Name  Signal transduction histidine kinase-related protein, C-terminal Short Name  Sig_transdc_His_kin-like_C
Type  Domain Description  Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK.A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ].Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coliEnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain.This domain is present in many sensor proteins that respond to extra-cytoplasmic stimuli in bacteria, but is also found in many proteins of metazoan origin. Sensors are usually linked to a 2-component regulatory system consisting of the sensor and a cytoplasmic regulator protein []. The cytoplasmic C-terminal portions of the sensor proteins show marked sequence similarity and are responsible for kinase activity []. Some sensor proteins are cytoplasmic and may respond to several external stimuli. Sensors also show similarity to some regulatory proteins []. The structure of CheA, a signal-transducing histidine kinase is known []. The catalytic domain consists of several alpha-helices packed over one face of a large anti-parallel beta sheet forming a loop which closes over the bound ATP. Hydrolysis of ATP is coupled to Mg 2+release and conformational changes in the ATP-binding cavity.
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Sequence Features

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Proteins

InterPro protein domain ID --> Contigs

 

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11 Found In

Id Name Short Name Type
IPR006290 Heavy metal sensor kinase CztS_silS_copS Family
IPR017203 Signal transduction histidine kinase, NreB Sig_transdc_His_kinase_NreB Family
IPR014285 Nitrogen fixation negative regulator NifL N_fixation_neg-reg_NifL Family
IPR017116 Signal transduction histidine kinase, PgtB Sig_transdc_His_kinase_PgtB Family
IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR Sig_transdc_His_kinase_PhoR Family
IPR014265 Signal transduction histidine kinase, PEP-CTERM system, putative Sig_transdc_His_kin_PEP-CTERM Family
IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB Sig_transdc_His_kin_hyb_ArcB Family
IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) Sig_transdc_His_kinase_DctB Family
IPR017181 Signal transduction histidine kinase, CHASE2/PAS sensor domain-containing, predicted Sig_transdc_His_kin_CHASE2_PAS Family
IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator Sig_transdc_His_kinase_NtrY Family
IPR014302 Signal transduction histidine kinase, TMAO sensor TorS Sig_transdc_His_kinase_TorS Family

0 Parent Features

15 Publications

First Author Title Year Journal Volume Pages
Wolanin PM Histidine protein kinases: key signal transducers outside the animal kingdom. 2002 Genome Biol 3 REVIEWS3013
Stock AM Two-component signal transduction. 2000 Annu Rev Biochem 69 183-215
Skerker JM Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis. 2005 PLoS Biol 3 e334
Laub MT Specificity in two-component signal transduction pathways. 2007 Annu Rev Genet 41 121-45
Varughese KI Molecular recognition of bacterial phosphorelay proteins. 2002 Curr Opin Microbiol 5 142-8
Hoch JA Keeping signals straight in phosphorelay signal transduction. 2001 J Bacteriol 183 4941-9
Bilwes AM Structure of CheA, a signal-transducing histidine kinase. 1999 Cell 96 131-41
Perego M Protein aspartate phosphatases control the output of two-component signal transduction systems. 1996 Trends Genet 12 97-101
Tomomori C Solution structure of the homodimeric core domain of Escherichia coli histidine kinase EnvZ. 1999 Nat Struct Biol 6 729-34
Vierstra RD Bacteriophytochromes: new tools for understanding phytochrome signal transduction. 2000 Semin Cell Dev Biol 11 511-21
West AH Histidine kinases and response regulator proteins in two-component signaling systems. 2001 Trends Biochem Sci 26 369-76
Alex LA Protein histidine kinases and signal transduction in prokaryotes and eukaryotes. 1994 Trends Genet 10 133-8
Parkinson JS Communication modules in bacterial signaling proteins. 1992 Annu Rev Genet 26 71-112
Gross R Families of bacterial signal-transducing proteins. 1989 Mol Microbiol 3 1661-7
Nixon BT Two-component regulatory systems responsive to environmental stimuli share strongly conserved domains with the nitrogen assimilation regulatory genes ntrB and ntrC. 1986 Proc Natl Acad Sci U S A 83 7850-4



To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)