Contig : dd_Smed_v6_99_0_1 S. mediterranea

Id  dd_Smed_v6_99_0_1 Length  651    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_035426.1 Mus musculus ribosomal protein S18 2.0E-68 135-539 405 1
NP_775341.1 Danio rerio ribosomal protein S18 1.0E-69 135-539 405 1
NP_001084747.1 Xenopus laevis ribosomal protein S18 2.0E-69 135-539 405 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.8.50 GENE3D   1.2E-24 168-380 213 1
G3DSA:4.10.910.10 GENE3D IPR027437 30s ribosomal protein s13, domain 2 3.5E-23 450-587 138 1
PF00416 PFAM IPR001892 Ribosomal protein S13/S18 1.1E-38 174-557 384 1
PS00646 PROSITE IPR018269 Ribosomal protein S13 signature. 0.0 495-533 39 1
PTHR10871 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S1 7.4E-98 135-593 459 1
PS50159 PROFILE IPR001892 Ribosomal protein S13 family profile. 34.497 177-566 390 1
SSF46946 SSF IPR010979 S13-like H2TH domain 5.1E-38 171-587 417 1

2 ORFs

Contig Location Length Strand Sequence
135-596 462 1
536-649 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317649 9.3E-102 3 339.7 0.6927803 138-588 451 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)