Transcript : dd_Smed_v6_99_0_1 S. mediterranea

Length  651     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967627.1, clone NBE.5.02C mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_035426.1 Mus musculus ribosomal protein S18 2.0E-68 135-539 405 1
NP_775341.1 Danio rerio ribosomal protein S18 1.0E-69 135-539 405 1
NP_001084747.1 Xenopus laevis ribosomal protein S18 2.0E-69 135-539 405 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.8.50 GENE3D   1.2E-24 168-380 213 1
G3DSA:4.10.910.10 GENE3D IPR027437 30s ribosomal protein s13, domain 2 3.5E-23 450-587 138 1
PF00416 PFAM IPR001892 Ribosomal protein S13/S18 1.1E-38 174-557 384 1
PS00646 PROSITE IPR018269 Ribosomal protein S13 signature. 0.0 495-533 39 1
PTHR10871 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S1 7.4E-98 135-593 459 1
PS50159 PROFILE IPR001892 Ribosomal protein S13 family profile. 34.497 177-566 390 1
SSF46946 SSF IPR010979 S13-like H2TH domain 5.1E-38 171-587 417 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
135-596 462 1
536-649 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317649 9.3E-102 3 339.7 0.6927803 138-588 451 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)