Contig : dd_Smed_v6_997_0_1 S. mediterranea

Id  dd_Smed_v6_997_0_1 Length  1263    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006513955.1 Mus musculus nucleosome assembly protein 1-like 1 4.0E-80 142-1053 912 1
NP_004528.1 Homo sapiens nucleosome assembly protein 1-like 1 2.0E-79 142-1050 909 1
XP_003396052.1 Bombus terrestris nucleosome assembly protein 1-like 1-like 6.0E-88 142-1050 909 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11875:SF7 PANTHER AT14585P-RELATED 4.0E-115 118-1125 1008 1
PF00956 PFAM IPR002164 Nucleosome assembly protein (NAP) 2.3E-74 238-1053 816 1
PTHR11875 PANTHER IPR002164 TESTIS-SPECIFIC Y-ENCODED PROTEIN 4.0E-115 118-1125 1008 1
SSF143113 SSF NAP-like 5.75E-81 202-1050 849 1

4 ORFs

Contig Location Length Strand Sequence
73-1146 1074 1
27-236 210 -1
638-817 180 1
350-451 102 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314349 7.2E-142 1 474.1 0.7133808 225-1125 901 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)