Transcript : dd_Smed_v6_997_0_1 S. mediterranea

Length  1263     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006513955.1 Mus musculus nucleosome assembly protein 1-like 1 4.0E-80 142-1053 912 1
NP_004528.1 Homo sapiens nucleosome assembly protein 1-like 1 2.0E-79 142-1050 909 1
XP_003396052.1 Bombus terrestris nucleosome assembly protein 1-like 1 6.0E-88 142-1050 909 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11875:SF7 PANTHER AT14585P-RELATED 4.0E-115 118-1125 1008 1
PF00956 PFAM IPR002164 Nucleosome assembly protein (NAP) 2.3E-74 238-1053 816 1
PTHR11875 PANTHER IPR002164 TESTIS-SPECIFIC Y-ENCODED PROTEIN 4.0E-115 118-1125 1008 1
SSF143113 SSF NAP-like 5.75E-81 202-1050 849 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
73-1146 1074 1
27-236 210 -1
638-817 180 1
350-451 102 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314349 7.2E-142 1 474.1 0.7133808 225-1125 901 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)