Contig : dd_Smed_v6_983_0_1 S. mediterranea

Id  dd_Smed_v6_983_0_1 Length  2510    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001034485.1 Homo sapiens macrophage expressed 1 3.0E-105 188-1972 1785 1
NP_034951.1 Mus musculus macrophage expressed gene 1 5.0E-100 182-2101 1920 1
XP_003774636.1 Sarcophilus harrisii macrophage-expressed gene 1 protein-like 7.0E-107 182-2068 1887 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR31463 PANTHER FAMILY NOT NAMED 2.4E-177 101-2062 1962 1
PS51412 PROFILE IPR020864 Membrane attack complex/perforin (MACPF) domain profile. 16.281 152-1138 987 1
PF01823 PFAM IPR020864 MAC/Perforin domain 2.8E-23 482-1072 591 1
SM00457 SMART IPR020864 membrane-attack complex / perforin 1.0E-7 533-1132 600 1
PTHR31463:SF1 PANTHER NOVEL PROTEIN SIMILAR TO H.SAPIENS MPEG1, MACROPHA 2.4E-177 101-2062 1962 1

7 ORFs

Contig Location Length Strand Sequence
101-2137 2037 1
177-419 243 -1
441-644 204 1
1378-1566 189 1
858-995 138 1
1927-2046 120 1
732-833 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF331165 7.0E-192 2 638.8 0.7450199 162-2031 1870 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)