Contig : dd_Smed_v6_977_0_1 S. mediterranea

Id  dd_Smed_v6_977_0_1 Length  873    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_608996.1 Drosophila melanogaster Actin-related protein 2/3 complex, subunit 4 3.0E-91 124-618 495 1
NP_005709.1 Homo sapiens actin related protein 2/3 complex, subunit 4, 20kDa 5.0E-90 124-618 495 1
XP_321841.2 Anopheles gambiae str. PEST AGAP001306-PA 4.0E-94 124-618 495 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR22629 PANTHER IPR008384 ARP2/3 COMPLEX 20 KD SUBUNIT 1.3E-128 124-618 495 1
SSF69645 SSF Arp2/3 complex subunits 2.16E-76 127-615 489 1
PF05856 PFAM IPR008384 ARP2/3 complex 20 kDa subunit (ARPC4) 1.1E-76 124-615 492 1
G3DSA:3.30.1460.20 GENE3D   2.4E-81 121-615 495 1

4 ORFs

Contig Location Length Strand Sequence
121-621 501 1
378-530 153 -1
213-341 129 -1
281-394 114 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105621 5.5E-123 1 409.7 0.5647194 126-618 493 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)