Transcript : dd_Smed_v6_977_0_1 S. mediterranea

Length  873     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_608996.1 Drosophila melanogaster Actin-related protein 2/3 complex, subunit 4 3.0E-91 124-618 495 1
NP_005709.1 Homo sapiens actin related protein 2/3 complex subunit 4 5.0E-90 124-618 495 1
XP_321841.2 Anopheles gambiae str. PEST AGAP001306-PA 4.0E-94 124-618 495 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR22629 PANTHER IPR008384 ARP2/3 COMPLEX 20 KD SUBUNIT 1.3E-128 124-618 495 1
SSF69645 SSF Arp2/3 complex subunits 2.16E-76 127-615 489 1
PF05856 PFAM IPR008384 ARP2/3 complex 20 kDa subunit (ARPC4) 1.1E-76 124-615 492 1
G3DSA:3.30.1460.20 GENE3D   2.4E-81 121-615 495 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
121-621 501 1
378-530 153 -1
213-341 129 -1
281-394 114 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105621 5.5E-123 1 409.7 0.5647194 126-618 493 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)