Contig : dd_Smed_v6_966_0_1 S. mediterranea

Id  dd_Smed_v6_966_0_1 Length  1274    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611878.1 Drosophila melanogaster CG3186 gene product from transcript CG3186-RB 1.0E-55 74-538 465 1
NP_001961.1 Homo sapiens eukaryotic translation initiation factor 5A 1.0E-50 95-538 444 1
XP_008471649.1 Diaphorina citri eukaryotic translation initiation factor 5A 5.0E-59 74-538 465 1

21 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01287 PFAM IPR020189 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 9.0E-29 326-526 201 1
TIGR00037 TIGRFAMs IPR001884 eIF_5A: translation elongation factor IF5A 2.8E-42 122-520 399 1
PF00467 PFAM IPR005824 KOW motif 1.7E-4 155-247 93 1
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 1.26E-22 326-526 201 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 1.45E-24 113-346 234 1
G3DSA:2.30.30.30 GENE3D IPR014722   8.0E-38 113-316 204 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 1.3E-29 326-532 207 1
PTHR11673 PANTHER IPR001884 TRANSLATION INITIATION FACTOR 5A-RELATED 2.5E-90 71-538 468 1
PS00302 PROSITE IPR019769 Eukaryotic initiation factor 5A hypusine signature. 0.0 218-238 21 1
PF01221 PFAM IPR001372 Dynein light chain type 1 2.7E-19 675-923 249 -1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 1.5E-34 672-1208 537 -1
SSF54648 SSF DLC 9.42E-23 675-929 255 -1
PF13499 PFAM IPR011992 EF-hand domain pair 8.5E-11 1029-1190 162 -1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 8.1E-22 675-926 252 -1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.0E-11 999-1202 204 -1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.99 1017-1100 84 -1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 20.0 1119-1202 84 -1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 11.724 1008-1112 105 -1
SSF47473 SSF EF-hand 4.94E-13 1014-1205 192 -1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.5E-34 672-1208 537 -1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 1038-1073 36 -1

3 ORFs

Contig Location Length Strand Sequence
664-1206 543 -1
74-541 468 1
575-883 309 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 3.6E-48 4 163.6 0.42072213 668-1205 538 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)