Transcript : dd_Smed_v6_9664_0_1 S. mediterranea

Length  2241     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005244795.1 Homo sapiens tubulin tyrosine ligase like 10 3.0E-98 170-1351 1182 1
XP_006539044.1 Mus musculus tubulin tyrosine ligase-like family, member 10 5.0E-97 170-1285 1116 1
XP_002124641.2 Ciona intestinalis protein polyglycylase TTLL10-like 4.0E-119 92-1285 1194 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12241:SF72 PANTHER IPR027752 INACTIVE POLYGLYCYLASE TTLL10 2.8E-148 170-1909 1740 1
PS51221 PROFILE IPR004344 TTL domain profile. 31.887 158-1234 1077 1
PTHR12241 PANTHER TUBULIN TYROSINE LIGASE-RELATED 2.8E-148 170-1909 1740 1
SSF56059 SSF Glutathione synthetase ATP-binding domain-like 3.09E-19 938-1204 267 1
SSF56059 SSF Glutathione synthetase ATP-binding domain-like 3.09E-19 443-781 339 1
PF03133 PFAM IPR004344 Tubulin-tyrosine ligase family 5.4E-55 323-1201 879 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
2-1984 1983 1
469-729 261 -1
591-758 168 1
1275-1421 147 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329363 6.4E-183 2 609.9 0.5734047 117-1401 1285 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)