Contig : dd_Smed_v6_9664_0_1 S. mediterranea

Id  dd_Smed_v6_9664_0_1 Length  2241    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005244795.1 Homo sapiens tubulin tyrosine ligase-like family, member 10 3.0E-98 170-1351 1182 1
XP_006539044.1 Mus musculus tubulin tyrosine ligase-like family, member 10 5.0E-97 170-1285 1116 1
XP_002124641.2 Ciona intestinalis protein polyglycylase TTLL10-like 4.0E-119 92-1285 1194 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12241:SF72 PANTHER IPR027752 INACTIVE POLYGLYCYLASE TTLL10 2.8E-148 170-1909 1740 1
PS51221 PROFILE IPR004344 TTL domain profile. 31.887 158-1234 1077 1
PTHR12241 PANTHER TUBULIN TYROSINE LIGASE-RELATED 2.8E-148 170-1909 1740 1
SSF56059 SSF Glutathione synthetase ATP-binding domain-like 3.09E-19 938-1204 267 1
SSF56059 SSF Glutathione synthetase ATP-binding domain-like 3.09E-19 443-781 339 1
PF03133 PFAM IPR004344 Tubulin-tyrosine ligase family 5.4E-55 323-1201 879 1

4 ORFs

Contig Location Length Strand Sequence
2-1984 1983 1
469-729 261 -1
591-758 168 1
1275-1421 147 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329363 6.4E-183 2 609.9 0.5734047 117-1401 1285 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)