Contig : dd_Smed_v6_963_0_1 S. mediterranea

Id  dd_Smed_v6_963_0_1 Length  557    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_728295.1 Drosophila melanogaster Cytochrome c oxidase subunit VIb 1.0E-14 264-425 162 1
XP_785769.2 Strongylocentrotus purpuratus cytochrome c oxidase subunit 6B1-like 3.0E-16 264-428 165 1
XP_007842213.1 Moniliophthora roreri MCA 2997 subunit vib of cytochrome c oxidase 3.0E-16 207-425 219 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11387 PANTHER CYTOCHROME C OXIDASE POLYPEPTIDE VIB 4.0E-22 264-437 174 1
SSF47694 SSF IPR003213 Cytochrome c oxidase subunit h 1.44E-22 261-434 174 1
G3DSA:1.10.10.140 GENE3D IPR003213 Cytochrome C oxidase subunit h 1.0E-21 261-431 171 1
PTHR11387:SF2 PANTHER PROTEIN Y71H2AM.5 4.0E-22 264-437 174 1
PF02297 PFAM IPR003213 Cytochrome oxidase c subunit VIb 4.2E-12 270-428 159 1

2 ORFs

Contig Location Length Strand Sequence
90-458 369 1
187-315 129 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)