Transcript : dd_Smed_v6_963_0_1 S. mediterranea

Length  557     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_728295.1 Drosophila melanogaster Cytochrome c oxidase subunit VIb 1.0E-14 264-425 162 1
XP_785769.2 Strongylocentrotus purpuratus cytochrome c oxidase subunit 6B1 3.0E-16 264-428 165 1
XP_007842213.1 Moniliophthora roreri MCA 2997 subunit vib of cytochrome c oxidase 3.0E-16 207-425 219 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11387 PANTHER CYTOCHROME C OXIDASE POLYPEPTIDE VIB 4.0E-22 264-437 174 1
SSF47694 SSF IPR003213 Cytochrome c oxidase subunit h 1.44E-22 261-434 174 1
G3DSA:1.10.10.140 GENE3D IPR003213 Cytochrome C oxidase subunit h 1.0E-21 261-431 171 1
PTHR11387:SF2 PANTHER PROTEIN Y71H2AM.5 4.0E-22 264-437 174 1
PF02297 PFAM IPR003213 Cytochrome oxidase c subunit VIb 4.2E-12 270-428 159 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
90-458 369 1
187-315 129 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)