Transcript : dd_Smed_v6_957_0_1 S. mediterranea

Length  1882     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592430.1 Schmidtea mediterranea NADH dehydrogenase subunit 5 0.0 692-1861 1170 1
YP_004936152.1 Dugesia japonica NADH dehydrogenase subunit 5 2.0E-71 698-1591 894 1
YP_009045449.1 Bhagadatta austenia NADH dehydrogenase subunit 5 8.0E-46 695-1591 897 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR22773 PANTHER NADH DEHYDROGENASE 3.0E-35 1106-1699 594 1
PF00361 PFAM IPR001750 NADH-Ubiquinone/plastoquinone (complex I), various chains 2.3E-35 1106-1594 489 1
PR01434 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 1.46E-13 1637-1693 57 1
PR01434 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 1.46E-13 1130-1207 78 1
PR01434 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 1.46E-13 1328-1363 36 1
PF00499 PFAM IPR001457 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1.4E-8 132-503 372 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
1118-1741 624 1
351-545 195 1
698-865 168 1
1778-1882 105 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF342974 2.6E-32 2 110.3 0.55844843 663-1713 1051 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)