Contig : dd_Smed_v6_957_0_1 S. mediterranea

Id  dd_Smed_v6_957_0_1 Length  1882    Open in Genome Browser

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592430.1 Schmidtea mediterranea NADH dehydrogenase subunit 5 0.0 692-1861 1170 1
YP_004936152.1 Dugesia japonica NADH dehydrogenase subunit 5 2.0E-71 698-1591 894 1
YP_009045449.1 Bhagadatta austenia NADH dehydrogenase subunit 5 8.0E-46 695-1591 897 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR22773 PANTHER NADH DEHYDROGENASE 3.0E-35 1106-1699 594 1
PF00361 PFAM IPR001750 NADH-Ubiquinone/plastoquinone (complex I), various chains 2.3E-35 1106-1594 489 1
PR01434 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 1.46E-13 1637-1693 57 1
PR01434 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 1.46E-13 1130-1207 78 1
PR01434 PRINTS NADH-ubiquinone oxidoreductase chain 5 signature 1.46E-13 1328-1363 36 1
PF00499 PFAM IPR001457 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1.4E-8 132-503 372 1

4 ORFs

Contig Location Length Strand Sequence
1118-1741 624 1
351-545 195 1
698-865 168 1
1778-1882 105 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF342974 2.6E-32 2 110.3 0.55844843 663-1713 1051 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)