Transcript : dd_Smed_v6_95618_0_1 S. mediterranea

Length  215     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524781.1 Drosophila melanogaster Ribosomal protein L37A 3.0E-31 3-209 207 -1
NP_000989.1 Homo sapiens ribosomal protein L37a 7.0E-31 3-209 207 -1
NP_496957.1 Caenorhabditis elegans Protein RPL-43 4.0E-41 3-209 207 -1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.20.25.30 GENE3D IPR011331   6.6E-32 1-180 180 -1
PTHR11517 PANTHER 60S RIBOSOMAL PROTEIN L37A 4.2E-46 1-213 213 -1
TIGR00280 TIGRFAMs IPR002674 L37a: ribosomal protein L37a 1.9E-29 4-207 204 -1
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 7.32E-27 1-180 180 -1
PF01780 PFAM IPR002674 Ribosomal L37ae protein family 3.4E-32 1-204 204 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
3-215 213 1
3-215 213 -1
2-193 192 1
71-214 144 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313068 1.8E-34 6 117.2 0.9348837 1-203 203 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)