Contig : dd_Smed_v6_95618_0_1 S. mediterranea

Id  dd_Smed_v6_95618_0_1 Length  215    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524781.1 Drosophila melanogaster Ribosomal protein L37A 3.0E-31 3-209 207 -1
NP_000989.1 Homo sapiens ribosomal protein L37a 7.0E-31 3-209 207 -1
NP_496957.1 Caenorhabditis elegans Protein RPL-43 4.0E-41 3-209 207 -1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.20.25.30 GENE3D IPR011331   6.6E-32 1-180 180 -1
PTHR11517 PANTHER 60S RIBOSOMAL PROTEIN L37A 4.2E-46 1-213 213 -1
TIGR00280 TIGRFAMs IPR002674 L37a: ribosomal protein L37a 1.9E-29 4-207 204 -1
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 7.32E-27 1-180 180 -1
PF01780 PFAM IPR002674 Ribosomal L37ae protein family 3.4E-32 1-204 204 -1

4 ORFs

Contig Location Length Strand Sequence
3-215 213 1
3-215 213 -1
2-193 192 1
71-214 144 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313068 1.8E-34 6 117.2 0.9348837 1-203 203 -1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)