Contig : dd_Smed_v6_9342_0_1 S. mediterranea

Id  dd_Smed_v6_9342_0_1 Length  5141    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_940857.2 Homo sapiens SCO-spondin 2.0E-119 509-4768 4260 1
XP_006508564.1 Mus musculus mucin 5, subtypes A and C, tracheobronchial/gastric 2.0E-109 770-4453 3684 1
XP_005994285.1 Latimeria chalumnae SCO-spondin-like 5.0E-173 605-5029 4425 1

54 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00261 PRINTS IPR002172 Low density lipoprotein (LDL) receptor signature 1.2E-24 4688-4750 63 1
SSF57424 SSF IPR002172 LDL receptor-like module 1.44E-8 4541-4654 114 1
PR00261 PRINTS IPR002172 Low density lipoprotein (LDL) receptor signature 1.2E-24 4808-4870 63 1
SM00192 SMART IPR002172 Low-density lipoprotein receptor domain class A 9.2E-11 4772-4885 114 1
SM00192 SMART IPR002172 Low-density lipoprotein receptor domain class A 2.0E-9 4430-4537 108 1
PS51233 PROFILE IPR001846 VWFD domain profile. 25.391 1871-2545 675 1
SSF57424 SSF IPR002172 LDL receptor-like module 5.24E-9 4424-4534 111 1
PR00261 PRINTS IPR002172 Low density lipoprotein (LDL) receptor signature 1.2E-24 4577-4639 63 1
PS50026 PROFILE IPR000742 EGF-like domain profile. 10.087 434-538 105 1
PS50068 PROFILE IPR002172 LDL-receptor class A (LDLRA) domain profile. 13.262 4430-4537 108 1
SM00192 SMART IPR002172 Low-density lipoprotein receptor domain class A 1.3E-6 4541-4648 108 1
SM00192 SMART IPR002172 Low-density lipoprotein receptor domain class A 6.3E-5 4652-4768 117 1
PR00261 PRINTS IPR002172 Low density lipoprotein (LDL) receptor signature 1.2E-24 4463-4525 63 1
G3DSA:4.10.400.10 GENE3D IPR002172 Low-density Lipoprotein Receptor 4.1E-11 4430-4552 123 1
PS50068 PROFILE IPR002172 LDL-receptor class A (LDLRA) domain profile. 9.975 4889-5029 141 1
PS51233 PROFILE IPR001846 VWFD domain profile. 31.564 3314-3961 648 1
SM00216 SMART IPR001846 von Willebrand factor (vWF) type D domain 2.2E-16 737-1255 519 1
SM00216 SMART IPR001846 von Willebrand factor (vWF) type D domain 2.2E-28 3275-3766 492 1
SM00216 SMART IPR001846 von Willebrand factor (vWF) type D domain 2.9E-28 1844-2392 549 1
PF00094 PFAM IPR001846 von Willebrand factor type D domain 1.9E-21 3317-3745 429 1
PF00094 PFAM IPR001846 von Willebrand factor type D domain 9.5E-19 770-1243 474 1
PF00094 PFAM IPR001846 von Willebrand factor type D domain 9.7E-20 1877-2392 516 1
PS50068 PROFILE IPR002172 LDL-receptor class A (LDLRA) domain profile. 12.85 4772-4882 111 1
G3DSA:4.10.400.10 GENE3D IPR002172 Low-density Lipoprotein Receptor 1.1E-5 4949-5029 81 1
PS50068 PROFILE IPR002172 LDL-receptor class A (LDLRA) domain profile. 12.775 4541-4651 111 1
SM00192 SMART IPR002172 Low-density lipoprotein receptor domain class A 0.016 4889-5032 144 1
G3DSA:2.10.25.10 GENE3D Laminin 2.0E-17 4124-4342 219 1
G3DSA:2.10.25.10 GENE3D Laminin 7.7E-10 2717-2905 189 1
PF00057 PFAM IPR002172 Low-density lipoprotein receptor domain class A 1.1E-8 4769-4879 111 1
PF00057 PFAM IPR002172 Low-density lipoprotein receptor domain class A 2.4E-9 4430-4534 105 1

23 ORFs

Contig Location Length Strand Sequence
2-5140 5139 1
1497-1883 387 1
3244-3471 228 1
2571-2786 216 1
2790-2993 204 1
4503-4694 192 -1
4960-5139 180 -1
3243-3419 177 -1
994-1158 165 -1
4729-4890 162 -1
414-557 144 1
3823-3957 135 -1
2581-2715 135 -1
4461-4592 132 1
3376-3507 132 -1
3936-4058 123 1
3202-3321 120 -1
900-1016 117 1
3857-3970 114 -1
829-939 111 -1
4158-4265 108 1
1803-1907 105 -1
5040-5141 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)