Transcript : dd_Smed_v6_9213_0_1 S. mediterranea
Length  1200     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Lists
This Contig is in 2 lists:
All contigs for Schmidtea mediterranea (241406)
All contigs in dd_Smed (41745)

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006564472.1 Apis mellifera RISC-loading complex subunit tarbp2-like 3.0E-14 40-1074 1035 1
XP_006623050.1 Apis dorsata RISC-loading complex subunit tarbp2-like 3.0E-14 40-1074 1035 1
XP_003692250.1 Apis florea RISC-loading complex subunit tarbp2-like 4.0E-14 40-1074 1035 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.160.20 GENE3D IPR014720   6.2E-17 58-252 195 1
G3DSA:3.30.160.20 GENE3D IPR014720   3.6E-12 466-654 189 1
PF00035 PFAM IPR014720 Double-stranded RNA binding motif 2.1E-7 469-651 183 1
PF00035 PFAM IPR014720 Double-stranded RNA binding motif 1.0E-8 61-243 183 1
PTHR10910:SF91 PANTHER LD06392P-RELATED 4.7E-43 40-1086 1047 1
PS50137 PROFILE IPR014720 Double stranded RNA-binding domain (dsRBD) profile. 11.868 466-660 195 1
PTHR10910 PANTHER EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN 4.7E-43 40-1086 1047 1
SM00358 SMART IPR014720 Double-stranded RNA binding motif 4.2E-7 469-657 189 1
SM00358 SMART IPR014720 Double-stranded RNA binding motif 2.3E-11 61-255 195 1
PS50137 PROFILE IPR014720 Double stranded RNA-binding domain (dsRBD) profile. 14.466 58-258 201 1
SSF54768 SSF dsRNA-binding domain-like 1.16E-17 49-282 234 1
SSF54768 SSF dsRNA-binding domain-like 2.83E-14 460-666 207 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
43-1107 1065 1
206-379 174 -1
543-689 147 -1
228-359 132 -1
593-715 123 -1
449-568 120 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF315953 7.0E-49 1 166.7 0.8408333 54-1062 1009 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)