Contig : dd_Smed_v6_907_0_1 S. mediterranea

Id  dd_Smed_v6_907_0_1 Length  2671    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000420.1 Homo sapiens methionine adenosyltransferase I, alpha 0.0 154-1308 1155 1
NP_598414.1 Mus musculus methionine adenosyltransferase I, alpha 0.0 154-1308 1155 1
NP_599178.1 Rattus norvegicus methionine adenosyltransferase II, alpha 0.0 130-1308 1179 1

26 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00376 PROSITE IPR022631 S-adenosylmethionine synthase signature 1. 0.0 514-543 30 1
PF00438 PFAM IPR022628 S-adenosylmethionine synthetase, N-terminal domain 6.4E-40 172-465 294 1
TIGR01034 TIGRFAMs IPR002133 metK: methionine adenosyltransferase 1.7E-178 178-1302 1125 1
SSF55973 SSF IPR022636 S-adenosylmethionine synthetase 1.61E-67 877-1302 426 1
G3DSA:3.30.300.10 GENE3D   4.2E-67 910-1302 393 1
G3DSA:3.30.300.10 GENE3D   4.3E-48 196-570 375 1
SSF55973 SSF IPR022636 S-adenosylmethionine synthetase 1.39E-51 502-873 372 1
PS00377 PROSITE IPR022631 S-adenosylmethionine synthase signature 2. 0.0 955-978 24 1
G3DSA:3.30.300.10 GENE3D   6.5E-46 574-876 303 1
PTHR11964 PANTHER IPR002133 S-ADENOSYLMETHIONINE SYNTHETASE 0.0 112-1305 1194 1
PF02773 PFAM IPR022630 S-adenosylmethionine synthetase, C-terminal domain 1.1E-74 877-1287 411 1
SSF55973 SSF IPR022636 S-adenosylmethionine synthetase 1.29E-44 172-492 321 1
PF02772 PFAM IPR022629 S-adenosylmethionine synthetase, central domain 1.2E-48 508-870 363 1
SM00233 SMART IPR001849 Pleckstrin homology domain. 2.5E-18 1442-1786 345 -1
G3DSA:2.30.29.30 GENE3D IPR011993 Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 2.2E-30 1451-1798 348 -1
PS50190 PROFILE IPR000904 SEC7 domain profile. 30.591 1850-2395 546 -1
SSF50729 SSF PH domain-like 2.52E-26 1436-1792 357 -1
G3DSA:1.10.1000.11 GENE3D IPR023394 Arf Nucleotide-binding Site Opener,domain 2 3.8E-29 1841-2179 339 -1
PTHR10663 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 2.0E-70 1412-2530 1119 -1
G3DSA:1.10.220.20 GENE3D   1.1E-22 2183-2404 222 -1
PF00169 PFAM IPR001849 PH domain 2.4E-14 1451-1783 333 -1
PTHR10663:SF13 PANTHER MIP16918P 2.0E-70 1412-2530 1119 -1
SM00222 SMART IPR000904 Sec7 domain 2.4E-45 1844-2410 567 -1
SSF48425 SSF IPR000904 Sec7 domain 4.19E-53 1844-2401 558 -1
PS50003 PROFILE IPR001849 PH domain profile. 15.708 1448-1789 342 -1
PF01369 PFAM IPR000904 Sec7 domain 4.7E-49 1844-2395 552 -1

8 ORFs

Contig Location Length Strand Sequence
130-1308 1179 1
1408-2568 1161 -1
386-646 261 -1
322-489 168 -1
1162-1314 153 -1
2220-2363 144 1
2090-2200 111 1
1020-1121 102 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300511 6.5E-271 1 899.8 0.42381132 177-1308 1132 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)