Transcript : dd_Smed_v6_9053_0_1 S. mediterranea

Length  1659     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006538748.1 Mus musculus ski sarcoma viral oncogene homolog (avian) 2.0E-29 898-1422 525 1
NP_003027.1 Homo sapiens SKI proto-oncogene 4.0E-29 898-1422 525 1
XP_002739418.1 Saccoglossus kowalevskii ski oncogene-like 5.0E-34 898-1437 540 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10005:SF2 PANTHER SNO ONCOGENE, ISOFORM B 1.6E-71 874-1434 561 1
PTHR10005 PANTHER IPR023216 SKI ONCOGENE-RELATED 1.6E-71 874-1434 561 1
SSF63763 SSF IPR010919 SAND domain-like 8.89E-24 1222-1437 216 1
SSF46955 SSF IPR009061 Putative DNA-binding domain 2.29E-21 883-1158 276 1
PF08782 PFAM IPR014890 c-SKI Smad4 binding domain 2.1E-22 1222-1434 213 1
G3DSA:3.10.260.20 GENE3D IPR003380 Putative DNA-binding domain 3.6E-26 892-1158 267 1
G3DSA:3.10.390.10 GENE3D IPR010919 SAND domain 2.5E-24 1219-1434 216 1
SM01046 SMART IPR014890 c-SKI Smad4 binding domain 4.3E-9 1222-1437 216 1
PF02437 PFAM IPR003380 SKI/SNO/DAC family 7.0E-22 889-1158 270 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
856-1440 585 1
1076-1369 294 1
1337-1561 225 -1
303-491 189 1
2-160 159 1
1373-1519 147 1
529-675 147 -1
266-400 135 1
936-1052 117 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)