Contig : dd_Smed_v6_9053_0_1 S. mediterranea

Id  dd_Smed_v6_9053_0_1 Length  1659    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006538748.1 Mus musculus ski sarcoma viral oncogene homolog (avian) 2.0E-29 898-1422 525 1
NP_003027.1 Homo sapiens SKI proto-oncogene 4.0E-29 898-1422 525 1
XP_002739418.1 Saccoglossus kowalevskii ski oncogene-like 5.0E-34 898-1437 540 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10005:SF2 PANTHER SNO ONCOGENE, ISOFORM B 1.6E-71 874-1434 561 1
PTHR10005 PANTHER IPR023216 SKI ONCOGENE-RELATED 1.6E-71 874-1434 561 1
SSF63763 SSF IPR010919 SAND domain-like 8.89E-24 1222-1437 216 1
SSF46955 SSF IPR009061 Putative DNA-binding domain 2.29E-21 883-1158 276 1
PF08782 PFAM IPR014890 c-SKI Smad4 binding domain 2.1E-22 1222-1434 213 1
G3DSA:3.10.260.20 GENE3D IPR003380 Putative DNA-binding domain 3.6E-26 892-1158 267 1
G3DSA:3.10.390.10 GENE3D IPR010919 SAND domain 2.5E-24 1219-1434 216 1
SM01046 SMART IPR014890 c-SKI Smad4 binding domain 4.3E-9 1222-1437 216 1
PF02437 PFAM IPR003380 SKI/SNO/DAC family 7.0E-22 889-1158 270 1

9 ORFs

Contig Location Length Strand Sequence
856-1440 585 1
1076-1369 294 1
1337-1561 225 -1
303-491 189 1
2-160 159 1
1373-1519 147 1
529-675 147 -1
266-400 135 1
936-1052 117 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)