Contig : dd_Smed_v6_898_0_1 S. mediterranea

Id  dd_Smed_v6_898_0_1 Length  410    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 7.0E-51 44-310 267 1
NP_525075.1 Drosophila melanogaster cut up 2.0E-50 44-310 267 1
XP_008056250.1 Tarsius syrichta dynein, light chain, LC8-type 2 6.0E-53 17-310 294 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54648 SSF DLC 1.19E-40 44-307 264 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 8.2E-64 44-307 264 1
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 8.2E-64 44-307 264 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 7.7E-46 44-307 264 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 206-247 42 1
PF01221 PFAM IPR001372 Dynein light chain type 1 1.3E-43 44-307 264 1

4 ORFs

Contig Location Length Strand Sequence
44-310 267 1
50-259 210 -1
246-350 105 1
308-409 102 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354234 1.7E-44 2 152.0 0.66097564 39-309 271 1
TF300264 3.7E-69 2 231.7 0.6390244 45-306 262 1
TF324136 4.8E-17 2 61.3 0.5804878 66-303 238 1
TF340529 7.4E-26 5 90.2 0.65609753 32-302 271 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)