Transcript : dd_Smed_v6_894_0_1 S. mediterranea

Length  876     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523792.2 Drosophila melanogaster FK506-binding protein 2 6.0E-43 111-425 315 1
NP_004107.1 Homo sapiens FK506 binding protein 1B 1.0E-40 111-434 324 1
XP_003741384.1 Metaseiulus occidentalis 12 kDa FK506-binding protein-like 1.0E-49 111-434 324 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.50.40 GENE3D   3.1E-49 114-431 318 1
PTHR10516 PANTHER IPR023566 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1.7E-60 111-431 321 1
SSF54534 SSF FKBP-like 1.73E-42 114-431 318 1
PS50059 PROFILE IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 32.527 168-431 264 1
PF00254 PFAM IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase 1.9E-34 159-422 264 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
111-434 324 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)