Contig : dd_Smed_v6_8945_0_8 S. mediterranea

Id  dd_Smed_v6_8945_0_8 Length  1161    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001277633.1 Mus musculus solute carrier family 25 (mitochondrial carrier, brain), member 14 9.0E-91 143-1012 870 1
NP_001010875.1 Homo sapiens solute carrier family 25, member 30 1.0E-90 143-1012 870 1
XP_003203375.1 Meleagris gallopavo kidney mitochondrial carrier protein 1-like 1.0E-93 143-1012 870 1

15 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00153 PFAM IPR018108 Mitochondrial carrier protein 2.2E-22 146-424 279 1
PTHR24089:SF207 PANTHER BMCP, ISOFORM A 1.2E-126 143-1012 870 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 2.43E-7 143-181 39 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.8E-19 731-1003 273 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 2.43E-7 344-403 60 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 25.044 728-1003 276 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 2.0E-75 143-1003 861 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 5.2E-18 446-706 261 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 24.615 128-418 291 1
PTHR24089 PANTHER FAMILY NOT NAMED 1.2E-126 143-1012 870 1
SSF103506 SSF IPR023395 Mitochondrial carrier 4.97E-72 140-991 852 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 2.43E-7 182-223 42 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 2.43E-7 755-820 66 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 2.43E-7 488-541 54 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 18.029 443-700 258 1

3 ORFs

Contig Location Length Strand Sequence
128-1015 888 1
1021-1161 141 1
1035-1160 126 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF323211 2.5E-125 2 418.2 0.7424634 147-1008 862 1
TF354262 5.9E-54 2 182.3 0.73729545 147-1002 856 1
TF314806 2.8E-16 2 57.7 0.41171405 147-624 478 1
TF324506 2.7E-54 2 183.5 0.7295435 156-1002 847 1
TF354298 4.2E-32 2 109.7 0.4659776 156-696 541 1
TF354328 3.5E-85 2 285.4 0.7269595 159-1002 844 1
TF300743 3.3E-15 2 54.3 0.5641688 276-930 655 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)