Contig : dd_Smed_v6_877_0_1 S. mediterranea

Id  dd_Smed_v6_877_0_1 Length  753    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031643.1 Mus musculus caveolin 3 3.0E-24 224-520 297 1
NP_001166366.1 Homo sapiens caveolin 1, caveolae protein, 22kDa 1.0E-23 242-631 390 1
XP_005109533.1 Aplysia californica caveolin-1-like 2.0E-28 236-619 384 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10844 PANTHER IPR001612 CAVEOLIN 4.1E-40 242-631 390 1
PF01146 PFAM IPR001612 Caveolin 1.8E-37 236-625 390 1

3 ORFs

Contig Location Length Strand Sequence
239-634 396 1
358-543 186 1
607-753 147 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF315736 3.5E-45 2 153.7 0.499336 249-624 376 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)