Transcript : dd_Smed_v6_877_0_1 S. mediterranea

Length  753     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031643.1 Mus musculus caveolin 3 3.0E-24 224-520 297 1
NP_001166366.1 Homo sapiens caveolin 1 1.0E-23 242-631 390 1
XP_005109533.1 Aplysia californica caveolin-1-like 2.0E-28 236-619 384 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10844 PANTHER IPR001612 CAVEOLIN 4.1E-40 242-631 390 1
PF01146 PFAM IPR001612 Caveolin 1.8E-37 236-625 390 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
239-634 396 1
358-543 186 1
607-753 147 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF315736 3.5E-45 2 153.7 0.499336 249-624 376 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)