Contig : dd_Smed_v6_8630_0_1 S. mediterranea

Id  dd_Smed_v6_8630_0_1 Length  490    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038576.1 Mus musculus histone cluster 1, H3f 1.0E-89 2-406 405 1
NP_003520.1 Homo sapiens histone cluster 1, H3a 8.0E-89 2-406 405 1
XP_001862696.1 Culex quinquefasciatus Histone H3c 4.0E-90 2-406 405 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00125 PFAM IPR007125 Core histone H2A/H2B/H3/H4 3.1E-33 170-391 222 1
SSF47113 SSF IPR009072 Histone-fold 6.71E-57 2-394 393 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 338-400 63 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 47-88 42 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 5-46 42 1
SM00428 SMART IPR000164 Histone H3 9.8E-75 98-403 306 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 290-337 48 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 236-289 54 1
PS00959 PROSITE IPR000164 Histone H3 signature 2. 0.0 197-220 24 1
PTHR11426 PANTHER IPR000164 HISTONE H3 1.7E-132 2-403 402 1
PS00322 PROSITE IPR000164 Histone H3 signature 1. 0.0 41-58 18 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 98-160 63 1
G3DSA:1.10.20.10 GENE3D IPR009072 Histone, subunit A 2.6E-85 2-397 396 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.413765E-85 170-220 51 1

4 ORFs

Contig Location Length Strand Sequence
2-406 405 1
340-489 150 -1
3-137 135 1
2-118 117 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352440 8.0E-34 2 116.5 0.5836735 105-390 286 1
TF354293 1.1E-67 2 227.1 0.55918366 129-402 274 1
TF343899 1.6E-43 5 147.9 0.7693878 1-379 379 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)