Transcript : dd_Smed_v6_856_0_1 S. mediterranea

Length  655     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476761.3 Drosophila melanogaster abnormal wing discs 2.0E-65 61-519 459 1
NP_002503.1 Homo sapiens NME/NM23 nucleoside diphosphate kinase 2 3.0E-63 61-519 459 1
NP_032731.1 Mus musculus NME/NM23 nucleoside diphosphate kinase 2 3.0E-63 61-519 459 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 274-324 51 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 82-147 66 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 406-462 57 1
PTHR11349:SF46 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 6.3E-97 61-516 456 1
G3DSA:3.30.70.141 GENE3D IPR001564   7.4E-63 73-513 441 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 214-270 57 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 337-384 48 1
PS00469 PROSITE IPR023005 Nucleoside diphosphate kinases active site. 0.0 406-429 24 1
PF00334 PFAM IPR001564 Nucleoside diphosphate kinase 2.0E-52 76-477 402 1
PTHR11349 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 6.3E-97 61-516 456 1
SSF54919 SSF IPR001564 Nucleoside diphosphate kinase, NDK 1.57E-57 73-510 438 1
SM00562 SMART IPR001564   4.1E-80 73-483 411 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
1-519 519 1
58-216 159 -1
507-617 111 1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106373 9.1E-91 1 303.2 0.670229 78-516 439 1
TF106374 8.0E-24 1 82.5 0.65648854 72-501 430 1
TF354225 6.3E-20 1 70.1 0.56946564 93-465 373 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)