Contig : dd_Smed_v6_856_0_1 S. mediterranea

Id  dd_Smed_v6_856_0_1 Length  655    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476761.3 Drosophila melanogaster abnormal wing discs 2.0E-65 61-519 459 1
NP_002503.1 Homo sapiens NME/NM23 nucleoside diphosphate kinase 2 3.0E-63 61-519 459 1
NP_032731.1 Mus musculus NME/NM23 nucleoside diphosphate kinase 2 3.0E-63 61-519 459 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 274-324 51 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 82-147 66 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 406-462 57 1
PTHR11349:SF46 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 6.3E-97 61-516 456 1
G3DSA:3.30.70.141 GENE3D IPR001564   7.4E-63 73-513 441 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 214-270 57 1
PR01243 PRINTS IPR001564 Nucleoside diphosphate kinase signature 6.5E-51 337-384 48 1
PS00469 PROSITE IPR023005 Nucleoside diphosphate kinases active site. 0.0 406-429 24 1
PF00334 PFAM IPR001564 Nucleoside diphosphate kinase 2.0E-52 76-477 402 1
PTHR11349 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 6.3E-97 61-516 456 1
SSF54919 SSF IPR001564 Nucleoside diphosphate kinase, NDK 1.57E-57 73-510 438 1
SM00562 SMART IPR001564   4.1E-80 73-483 411 1

3 ORFs

Contig Location Length Strand Sequence
1-519 519 1
58-216 159 -1
507-617 111 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106373 9.1E-91 1 303.2 0.670229 78-516 439 1
TF106374 8.0E-24 1 82.5 0.65648854 72-501 430 1
TF354225 6.3E-20 1 70.1 0.56946564 93-465 373 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)