Transcript : dd_Smed_v6_8569_0_1 S. mediterranea

Length  1846     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Sequence Features

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0 Blast Sequence Features

15 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00360 SMART IPR000504 RNA recognition motif 0.031 976-1176 201 1
SM00360 SMART IPR000504 RNA recognition motif 1.8E-4 730-921 192 1
SM00360 SMART IPR000504 RNA recognition motif 0.026 169-375 207 1
SM00360 SMART IPR000504 RNA recognition motif 0.2 427-627 201 1
SSF54928 SSF RNA-binding domain, RBD 1.61E-8 973-1188 216 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 10.77 727-933 207 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-7 733-915 183 1
SSF54928 SSF RNA-binding domain, RBD 9.37E-7 151-393 243 1
G3DSA:3.30.70.330 GENE3D IPR012677   2.6E-5 976-1191 216 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.5E-10 181-639 459 1
G3DSA:3.30.70.330 GENE3D IPR012677   6.2E-11 718-930 213 1
PTHR24012:SF82 PANTHER NUCLEOLIN 2.0E-13 25-933 909 1
SSF54928 SSF RNA-binding domain, RBD 4.89E-16 427-927 501 1
PTHR24012 PANTHER FAMILY NOT NAMED 2.0E-13 25-933 909 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 9.149 166-390 225 1

Genomics

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4 ORFs

Contig Location Length Strand Sequence
49-1644 1596 1
988-1185 198 -1
654-839 186 -1
1286-1447 162 1

0 Treefam Sequence Features

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)