Contig : dd_Smed_v6_8569_0_1 S. mediterranea

Id  dd_Smed_v6_8569_0_1 Length  1846    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

0 Blast SequenceFeatures

15 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00360 SMART IPR000504 RNA recognition motif 0.031 976-1176 201 1
SM00360 SMART IPR000504 RNA recognition motif 1.8E-4 730-921 192 1
SM00360 SMART IPR000504 RNA recognition motif 0.026 169-375 207 1
SM00360 SMART IPR000504 RNA recognition motif 0.2 427-627 201 1
SSF54928 SSF RNA-binding domain, RBD 1.61E-8 973-1188 216 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 10.77 727-933 207 1
PF00076 PFAM IPR000504 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.1E-7 733-915 183 1
SSF54928 SSF RNA-binding domain, RBD 9.37E-7 151-393 243 1
G3DSA:3.30.70.330 GENE3D IPR012677   2.6E-5 976-1191 216 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.5E-10 181-639 459 1
G3DSA:3.30.70.330 GENE3D IPR012677   6.2E-11 718-930 213 1
PTHR24012:SF82 PANTHER NUCLEOLIN 2.0E-13 25-933 909 1
SSF54928 SSF RNA-binding domain, RBD 4.89E-16 427-927 501 1
PTHR24012 PANTHER FAMILY NOT NAMED 2.0E-13 25-933 909 1
PS50102 PROFILE IPR000504 Eukaryotic RNA Recognition Motif (RRM) profile. 9.149 166-390 225 1

4 ORFs

Contig Location Length Strand Sequence
49-1644 1596 1
988-1185 198 -1
654-839 186 -1
1286-1447 162 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)